PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001017m
Common NameCICLE_v10001017mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 477aa    MW: 50145.3 Da    PI: 9.7881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001017mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056587123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Ciclev10001017m 65 FVCEICNKGFQRDQNLQLHRRGH 87
                     89*******************88 PP

2zf-C2H217.21.4e-05141163123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ C+k +  +s+ k H++t+
  Ciclev10001017m 141 YKCERCSKKYAVQSDWKAHMKTC 163
                      9********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-86487No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496587IPR007087Zinc finger, C2H2
SMARTSM003550.0176587IPR015880Zinc finger, C2H2-like
PfamPF121717.5E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035594106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-6129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.15E-8136162No hitNo description
PROSITE profilePS501578.517141169IPR007087Zinc finger, C2H2
SMARTSM0035543141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MTEIVNSSAM TVASATGEAS VSSPGSQIQV IPPTQKKRRN LPGMPDPDSE VIALSPKTLL  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE VRKKVYVCPE STCVHHNPAR  120
ALGDLTGIKK HFSRKHGEKK YKCERCSKKY AVQSDWKAHM KTCGTREYKC DCGTIFSRRD  180
SFITHRAFCD ALAEESARTR TPAIEGNPNA KTVVSSPPPP PLTPSTGVVS PGLSIQSSEV  240
PADNPLIHSP PRPVATTPSA STSTSTVFAS VFSSSAISQP TQATGPSSFS NQISVSSTGI  300
EPTSLSLSPS LYLSSNNLFS KPEPSHIHYA PSPQPAMSAT ALLQKAAQIG ASSSSPSLLR  360
GLGLTMSSSS ADNQQENTNS ASAAAGLGLG LNSGFTDAMM DPSSLFGSKP TTLDLLGLGI  420
GADGASTTGL SALFTSFNGG FNVRPSAASY GGRRGSSPGD PWEGAPERKP NGAAFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191103KLKQRNSKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434957.10.0hypothetical protein CICLE_v10001017mg
SwissprotQ9LVQ71e-145IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLV4T4W20.0V4T4W2_9R
STRINGPOPTR_0002s26430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-116C2H2-like zinc finger protein